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AWS for Query.Farm

aws.omics.get_read_set

Example SQL Queries

SELECT * FROM
aws.omics.get_read_set
WHERE
"id" = 'VALUE'
AND "sequence_store_id" = 'VALUE'
AND "part_number" = 'VALUE';

Description

Gets a file from a read set.

Table Definition

Column NameColumn Data Type
id Required Input Column

The read set's ID.

VARCHAR
part_number Required Input Column

The part number to retrieve.

BIGINT
sequence_store_id Required Input Column

The read set's sequence store ID.

VARCHAR
file Input Column

The file to retrieve.

VARCHAR
_aws_profile Input Column

The AWS profile defines the AWS identity used. It can be defined via credentials or by assuming a IAM role.

STRUCT(
    "type" VARCHAR,
    "name" VARCHAR,
    "account_id" VARCHAR,
    "via_profile_name" VARCHAR,
    "assumed_role_arn" VARCHAR,
    "organization" STRUCT(
        "account_name" VARCHAR,
        "id" VARCHAR,
        "tags" STRUCT(
            "key" VARCHAR,
            "value" VARCHAR
        )[],
        "master_account" STRUCT(
            "id" VARCHAR,
            "email" VARCHAR
        ),
        "parents" STRUCT(
            "type" VARCHAR,
            "id" VARCHAR,
            "name" VARCHAR,
            "tags" STRUCT(
                "key" VARCHAR,
                "value" VARCHAR
            )[]
        )[]
    )
)
Show child fields
_aws_profile.account_id

The AWS account id

_aws_profile.assumed_role_arn

The ARN of the assumed role

_aws_profile.name

The unique name of the profile.

_aws_profile.organization

Information about this profile's membership in the AWS organization.

Show child fields
_aws_profile.organization.account_name

The name of account speciifed by the organization

_aws_profile.organization.id

The organization id

_aws_profile.organization.master_account
Show child fields
_aws_profile.organization.master_account.email

The organization master account email address

_aws_profile.organization.master_account.id

The organization master account id

_aws_profile.organization.parents[]
Show child fields
_aws_profile.organization.parents[].id

The id of the parent

_aws_profile.organization.parents[].name

The name of the parent

_aws_profile.organization.parents[].tags[]
Show child fields
_aws_profile.organization.parents[].tags[].key
_aws_profile.organization.parents[].tags[].value
_aws_profile.organization.parents[].type

The type of parent can be an organization unit or a root

_aws_profile.organization.tags[]
Show child fields
_aws_profile.organization.tags[].key
_aws_profile.organization.tags[].value
_aws_profile.type

The type of profile, either 'credentials' or 'assumed_role'

_aws_profile.via_profile_name

This IAM role for this profile is assumed by first utilizing another profile with this name to obtain credentials.

_aws_region Input Column

The AWS region to use.

VARCHAR
payload

The read set file payload.

BLOB